Basic Information
Locus ID:
BniB06g045040.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 48409993 | 48413800 | - | BniB06g045040.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 68,688.75 Da | 28.47 | 104.37 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 316 | 418 | 1.5087E-25 | - |
| CDD | cd00030 | C2 | 488 | 588 | 5.20351E-26 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 115 | 291 | 3.1E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 315 | 418 | 1.2E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 486 | 588 | 2.1E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 312 | 443 | 3.42E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 482 | 603 | 9.54E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 304 | 442 | 2.7E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 465 | 605 | 4.3E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 315 | 415 | 7.8E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 487 | 585 | 6.1E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 297 | 416 | 20.427988 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 110 | 292 | 28.871801 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 468 | 586 | 21.621075 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 529 | 542 | 1.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 551 | 559 | 1.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 503 | 515 | 1.1E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_018442035.1 | PREDICTED: synaptotagmin-5 [Raphanus sativus] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7U8U8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_061846 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology