Basic Information
Locus ID:
BniB06g044600.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 47892715 | 47896098 | - | BniB06g044600.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 29,683.33 Da | 70.65 | 76.94 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 99 | 149 | 3.23139E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 168 | 230 | 5.0E-16 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 237 | 2.12E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 180 | 8.39E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 179 | 1.4E-18 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 168 | 230 | 3.6E-23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 95 | 261 | 31.952244 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 145 | 9.553431 | IPR001841 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013585679.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI5 [Brassica oleracea var. oleracea] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7QEM7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_061790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah005159 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042136 |
| Apiaceae | Apium graveolens | 2 | Ag1G00014, Ag5G02870 |
| Brassicaceae | Brassica nigra | 1 | BniB06g044600.2N |
| Poaceae | Zea mays | 2 | Zm00001eb309470_P001, Zm00001eb383420_P001 |