Basic Information
Locus ID:
BniB06g043860.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 47514045 | 47519015 | + | BniB06g043860.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 104,877.66 Da | 41.67 | 93.97 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 625 | 891 | 8.91122E-93 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 69 | 1.4E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 622 | 888 | 6.5E-47 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 595 | 888 | 6.15E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 408 | 7.65E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 184 | 7.6E-38 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 589 | 694 | 1.3E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 695 | 915 | 1.7E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 292 | 390 | 7.6E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 291 | 2.9E-25 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 269 | 293 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 221 | 246 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 316 | 340 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 149 | 172 | 110.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 619 | 891 | 9.1E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 619 | 891 | 37.728607 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 739 | 751 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 625 | 647 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 934 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06840.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013697938.2 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Brassica napus] | 0 |
| C0LGD7 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7W6K6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_006762 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology