Basic Information
Locus ID:
BniB06g041540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 46318296 | 46320759 | + | BniB06g041540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 39,499.36 Da | 54.39 | 77.81 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.29911E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.3E-14 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 321 | 356 | 6.4E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 144 | 181 | 1.4E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 238 | 293 | 4.0E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 301 | 362 | 2.92E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 234 | 302 | 1.57E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 139 | 187 | 8.71E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 6.68E-20 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 136 | 186 | 9.6E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 312 | 362 | 2.6E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 228 | 293 | 2.2E-26 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.1E-25 | - |
| SMART | SM00727 | CBM | 234 | 279 | 2.3E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 321 | 358 | 2.2E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.7E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 143 | 183 | 4.5E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 364 | 1.6E-120 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.192556 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 318 | 359 | 14.9807 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 141 | 184 | 12.570991 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 315 | 331 | 7.1E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 264 | 286 | 7.1E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 332 | 346 | 7.1E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 362 | 7.1E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 142 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16190.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_013583779.1 | PREDICTED: probable ubiquitin receptor RAD23a isoform X3 [Brassica oleracea var. oleracea] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X8B740 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_006600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology