Basic Information
Locus ID:
BniB06g040840.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 45920769 | 45921536 | + | BniB06g040840.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 29,675.62 Da | 55.44 | 52.43 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 103 | 178 | 4.0E-22 | IPR012866 |
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 46 | 98 | 1.2E-23 | IPR012866 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 159 | 1.0E-5 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15430.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_013749879.2 | uncharacterized protein LOC106452335 [Brassica napus] | 0 |
| TrEMBL | A0A3P6ES21 | RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC5T30097H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G15430.1, AT1G80220.1, AT2G26050.1, AT5G38370.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008539m.g.v1.0, Thhalv10019622m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13800.v2.2, Sp5g35590.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g006440.2N, BniB03g026300.2N, BniB06g040840.2N ... |