Basic Information
Locus ID:
BniB06g040650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SNF1-related protein kinase regulatory subunit gamma-like PV42a
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 45835093 | 45836244 | + | BniB06g040650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 38,877.12 Da | 49.26 | 101.66 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02205 | CBS_pair_SF | 214 | 350 | 4.24989E-10 | - |
| Pfam | PF00571 | CBS domain | 304 | 352 | 5.3E-10 | IPR000644 |
| SUPERFAMILY | SSF54631 | CBS-domain pair | 10 | 194 | 1.3E-12 | - |
| SUPERFAMILY | SSF54631 | CBS-domain pair | 180 | 352 | 4.72E-20 | - |
| Gene3D | G3DSA:3.10.580.10 | - | 1 | 191 | 3.3E-11 | - |
| Gene3D | G3DSA:3.10.580.10 | - | 200 | 354 | 7.3E-22 | - |
| SMART | SM00116 | cbs_1 | 305 | 353 | 4.1E-11 | IPR000644 |
| SMART | SM00116 | cbs_1 | 28 | 98 | 110.0 | IPR000644 |
| SMART | SM00116 | cbs_1 | 216 | 279 | 0.51 | IPR000644 |
| ProSiteProfiles | PS51371 | CBS domain profile. | 302 | 356 | 11.284838 | IPR000644 |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15330.1 | Cystathionine beta-synthase (CBS) protein. | 0 |
| RefSeq | XP_048638290.1 | SNF1-related protein kinase regulatory subunit gamma-like PV42a [Brassica napus] | 0 |
| Q9XI37 | SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana OX=3702 GN=PV42A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7QDG1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_062939 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21400 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010557 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11579, Sbi_jg46520 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20832 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005160, GOSA_00005161 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56389, Sgl61920 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018961, gene:ENSEOMG00000038810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009790, CQ.Regalona.r1.9AG0014840 |
| Apiaceae | Apium graveolens | 5 | Ag5G01567, Ag9G01173, Ag9G01176, AgUnG01435, AgUnG01437 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710138 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1583.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01751 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15330.1, AT1G80090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008048m.g.v1.0, Thhalv10019455m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13650.v2.2, Sp5g35710.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g040650.2N, BniB06g068750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0324 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0338 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027744 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34090, Lb7G34356 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.424, BH07.549, CH07.411 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0102130, gene-QOZ80_2BG0155470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0564660.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G002840, Oco04G002820 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g06410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043900, gene-BS78_K002300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202563, Pt_Chr0202581 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G258400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG017850, gene_TRIDC6BG023620 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G132700.1, TraesCS6B02G160900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb232620_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33705, nbis-gene-33706 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1255, evm.TU.LG07.1779, evm.TU.LG11.603 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3652 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11576 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21762 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.331 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16326 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21393 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598778 |
| Solanaceae | Solanum chilense | 1 | SOLCI003611400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022738 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10150 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25850.v3.1 |