Basic Information
Locus ID:
BniB06g039030.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase RNF182-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 44869349 | 44870312 | - | BniB06g039030.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 27,730.93 Da | 45.20 | 107.24 | 0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 63 | 92 | 3.3E-9 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 120 | 1.17E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 129 | 6.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 63 | 117 | 0.0022 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 63 | 118 | 10.497623 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 82 | 91 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 54 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013649359.2 | uncharacterized protein LOC106354060 [Brassica napus] | 0 |
| TrEMBL | A0A8X7PWV3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_077902 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology