Basic Information
Locus ID:
BniB06g038850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
WRKY4
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 44704419 | 44706667 | + | BniB06g038850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 54,165.43 Da | 60.55 | 54.39 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 223 | 279 | 2.0E-26 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 398 | 455 | 3.3E-25 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 389 | 457 | 1.16E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 221 | 281 | 2.62E-26 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 382 | 458 | 2.7E-36 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 208 | 282 | 3.9E-29 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 222 | 280 | 6.6E-39 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 397 | 456 | 3.2E-39 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 392 | 457 | 38.319656 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 223 | 281 | 24.856667 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| Coils | Coil | Coil | 488 | 499 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_009148678.1 | probable WRKY transcription factor 4 [Brassica rapa] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G8R7K7 | WRKY53 transcription factor OS=Isatis tinctoria OX=161756 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology