Basic Information
Locus ID:
BniB06g037620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 43764857 | 43767297 | - | BniB06g037620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 69,016.45 Da | 37.30 | 89.98 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 207 | 462 | 4.4E-85 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 24 | 116 | 4.2E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 115 | 2.75E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 121 | 1.7E-13 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 207 | 486 | 84.700043 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.45472 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 626 | - | - |
| Coils | Coil | Coil | 527 | 547 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_013610132.1 | PREDICTED: BTB/POZ domain-containing protein NPY2 [Brassica oleracea var. oleracea] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816NP61 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A09P10530.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology