halophFGD

Basic Information

Locus ID: BniB06g030540.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B6	21447728	21447910	+	BniB06g030540.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.03	6,345.71 Da	26.47	53.67	-0.78

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	16	39	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	39	-	-

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G16670.1	Protein kinase superfamily protein.
RefSeq	XP_018442305.1	PREDICTED: putative serine/threonine-protein kinase isoform X2 [Raphanus sativus]
Swiss-Prot	Q93YN1	Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1
TrEMBL	A0A8X7WE55	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011169 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Brassica nigra	3	BniB06g030530.2N, BniB06g030540.2N, BniB07g014980.2N
Poaceae	Sporobolus alterniflorus	1	Chr06G019770