Basic Information
Locus ID:
BniB06g030530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 21446564 | 21447571 | + | BniB06g030530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 29,444.58 Da | 39.01 | 85.69 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 113 | 219 | 6.1E-18 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 96 | 231 | 9.58E-35 | IPR011009 |
| Gene3D | G3DSA:1.25.40.570 | - | 33 | 116 | 6.6E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 117 | 254 | 2.1E-21 | - |
| SMART | SM00220 | serkin_6 | 29 | 246 | 5.5E-7 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 255 | 17.488718 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 141 | 153 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16670.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_009149104.1 | cold-responsive protein kinase 1 [Brassica rapa] | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S2F4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034773 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 3 | BniB06g030530.2N, BniB06g030540.2N, BniB07g014980.2N |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G019770 |