halophFGD

Basic Information

Locus ID: BniB06g030160.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: F-box associated domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B6	20380377	20381111	-	BniB06g030160.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.40	27,912.07 Da	60.34	81.03	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	29	67	1.9E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	29	94	2.09E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	11	67	8.5E-8	-
SMART	SM00256	fbox_2	31	70	1.5E-5	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	128	217	4.6E-19	IPR017451
ProSiteProfiles	PS50181	F-box domain profile.	25	74	8.729132	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	1	16	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	27	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G47730.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_018488107.1	PREDICTED: LOW QUALITY PROTEIN: putative F-box protein At1g47730 [Raphanus sativus]
Swiss-Prot	Q9SXA0	Putative F-box protein At1g47730 OS=Arabidopsis thaliana OX=3702 GN=At1g47730 PE=4 SV=1
TrEMBL	A0A8X7WEV0	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011189 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag5G01648
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.1660.V1.1, AsparagusV1_07.1661.V1.1 ... AsparagusV1_07.1662.V1.1, AsparagusV1_08.1417.V1.1
Brassicaceae	Arabidopsis thaliana	77	AT1G19160.1, AT1G26510.1, AT1G26515.1, AT1G30920.1 ... AT1G30925.1, AT1G30930.1, AT1G31000.1, AT1G31080.1, AT1G31090.1, AT1G31163.1, AT1G32420.1, AT1G33010.1, AT1G33020.1, AT1G43005.1, AT1G46840.1, AT1G46912.1, AT1G46984.1, AT1G47300.1, AT1G47340.1, AT1G47350.1, AT1G47730.1, AT1G47765.1, AT1G47790.1, AT1G48060.1, AT1G50870.1, AT1G53360.1, AT1G53370.1, AT1G53550.1, AT1G53790.2, AT1G53815.1, AT1G55070.1, AT1G59675.1, AT1G60370.1, AT1G61060.1, AT1G67130.1, AT2G02660.1, AT2G02890.1, AT2G13630.1, AT2G15640.1, AT2G16220.1, AT2G16450.1, AT2G19630.1, AT2G21930.1, AT2G23160.1, AT2G31470.1, AT2G32470.1, AT2G33705.1, AT3G04660.1, AT3G10240.1, AT3G10790.1, AT3G10990.1, AT3G23960.1, AT3G47020.1, AT3G47030.1, AT3G49440.1, AT3G49450.1, AT3G56890.1, AT3G57580.1, AT3G57590.1, AT3G61340.1, AT4G09190.1, AT4G11590.1, AT4G13060.1, AT4G21240.1, AT4G29970.1, AT4G38870.1, AT5G15660.1, AT5G15670.1, AT5G18160.1, AT5G22791.2, AT5G38810.1, AT5G42430.1, AT5G43550.1, AT5G44220.1, AT5G52610.1, AT5G52620.1, AT5G65850.1
Brassicaceae	Eutrema salsugineum	140	Thhalv10000190m.g.v1.0, Thhalv10000202m.g.v1.0 ... Thhalv10000468m.g.v1.0, Thhalv10000505m.g.v1.0, Thhalv10000643m.g.v1.0, Thhalv10002880m.g.v1.0, Thhalv10002973m.g.v1.0, Thhalv10002976m.g.v1.0, Thhalv10003077m.g.v1.0, Thhalv10003313m.g.v1.0, Thhalv10003347m.g.v1.0, Thhalv10003356m.g.v1.0, Thhalv10003391m.g.v1.0, Thhalv10003413m.g.v1.0, Thhalv10005289m.g.v1.0, Thhalv10006428m.g.v1.0, Thhalv10006464m.g.v1.0, Thhalv10007859m.g.v1.0, Thhalv10009303m.g.v1.0, Thhalv10009304m.g.v1.0, Thhalv10009314m.g.v1.0, Thhalv10009316m.g.v1.0, Thhalv10009318m.g.v1.0, Thhalv10009326m.g.v1.0, Thhalv10009341m.g.v1.0, Thhalv10009344m.g.v1.0, Thhalv10009370m.g.v1.0, Thhalv10009377m.g.v1.0, Thhalv10009427m.g.v1.0, Thhalv10009437m.g.v1.0, Thhalv10009439m.g.v1.0, Thhalv10009451m.g.v1.0, Thhalv10009454m.g.v1.0, Thhalv10009507m.g.v1.0, Thhalv10009523m.g.v1.0, Thhalv10009543m.g.v1.0, Thhalv10009572m.g.v1.0, Thhalv10009588m.g.v1.0, Thhalv10009603m.g.v1.0, Thhalv10009610m.g.v1.0, Thhalv10009617m.g.v1.0, Thhalv10009628m.g.v1.0, Thhalv10009630m.g.v1.0, Thhalv10009643m.g.v1.0, Thhalv10009644m.g.v1.0, Thhalv10009646m.g.v1.0, Thhalv10009665m.g.v1.0, Thhalv10009733m.g.v1.0, Thhalv10009740m.g.v1.0, Thhalv10009752m.g.v1.0, Thhalv10009762m.g.v1.0, Thhalv10009794m.g.v1.0, Thhalv10009823m.g.v1.0, Thhalv10009829m.g.v1.0, Thhalv10009854m.g.v1.0, Thhalv10009883m.g.v1.0, Thhalv10009932m.g.v1.0, Thhalv10009934m.g.v1.0, Thhalv10010425m.g.v1.0, Thhalv10010942m.g.v1.0, Thhalv10011009m.g.v1.0, Thhalv10011044m.g.v1.0, Thhalv10011080m.g.v1.0, Thhalv10011121m.g.v1.0, Thhalv10011954m.g.v1.0, Thhalv10011960m.g.v1.0, Thhalv10011962m.g.v1.0, Thhalv10011966m.g.v1.0, Thhalv10011975m.g.v1.0, Thhalv10011993m.g.v1.0, Thhalv10011995m.g.v1.0, Thhalv10012047m.g.v1.0, Thhalv10012059m.g.v1.0, Thhalv10012065m.g.v1.0, Thhalv10012070m.g.v1.0, Thhalv10012082m.g.v1.0, Thhalv10012093m.g.v1.0, Thhalv10012114m.g.v1.0, Thhalv10012144m.g.v1.0, Thhalv10012153m.g.v1.0, Thhalv10012176m.g.v1.0, Thhalv10012180m.g.v1.0, Thhalv10012205m.g.v1.0, Thhalv10012217m.g.v1.0, Thhalv10012242m.g.v1.0, Thhalv10012245m.g.v1.0, Thhalv10012258m.g.v1.0, Thhalv10012264m.g.v1.0, Thhalv10012275m.g.v1.0, Thhalv10012279m.g.v1.0, Thhalv10012287m.g.v1.0, Thhalv10012302m.g.v1.0, Thhalv10012324m.g.v1.0, Thhalv10012341m.g.v1.0, Thhalv10012345m.g.v1.0, Thhalv10012346m.g.v1.0, Thhalv10012359m.g.v1.0, Thhalv10012370m.g.v1.0, Thhalv10012378m.g.v1.0, Thhalv10012379m.g.v1.0, Thhalv10015249m.g.v1.0, Thhalv10015343m.g.v1.0, Thhalv10015360m.g.v1.0, Thhalv10015410m.g.v1.0, Thhalv10015435m.g.v1.0, Thhalv10015621m.g.v1.0, Thhalv10015706m.g.v1.0, Thhalv10015829m.g.v1.0, Thhalv10015870m.g.v1.0, Thhalv10015881m.g.v1.0, Thhalv10015900m.g.v1.0, Thhalv10015925m.g.v1.0, Thhalv10017547m.g.v1.0, Thhalv10017821m.g.v1.0, Thhalv10017831m.g.v1.0, Thhalv10019461m.g.v1.0, Thhalv10019467m.g.v1.0, Thhalv10019504m.g.v1.0, Thhalv10019539m.g.v1.0, Thhalv10019545m.g.v1.0, Thhalv10019719m.g.v1.0, Thhalv10020859m.g.v1.0, Thhalv10021999m.g.v1.0, Thhalv10022001m.g.v1.0, Thhalv10022123m.g.v1.0, Thhalv10022199m.g.v1.0, Thhalv10022230m.g.v1.0, Thhalv10023641m.g.v1.0, Thhalv10023891m.g.v1.0, Thhalv10025406m.g.v1.0, Thhalv10026790m.g.v1.0, Thhalv10026850m.g.v1.0, Thhalv10027150m.g.v1.0, Thhalv10027194m.g.v1.0, Thhalv10027439m.g.v1.0, Thhalv10027600m.g.v1.0, Thhalv10028042m.g.v1.0, Thhalv10028106m.g.v1.0, Thhalv10029328m.g.v1.0, Thhalv10029487m.g.v1.0
Brassicaceae	Schrenkiella parvula	23	Sp1g02140.v2.2, Sp1g24400.v2.2, Sp1g27310.v2.2 ... Sp1g27840.v2.2, Sp1g33140.v2.2, Sp1g34250.v2.2, Sp1g34800.v2.2, Sp1g37610.v2.2, Sp1g37770.v2.2, Sp1g40720.v2.2, Sp3g00660.v2.2, Sp3g03500.v2.2, Sp3g03510.v2.2, Sp3g17210.v2.2, Sp4g14420.v2.2, Sp5g04230.v2.2, Sp5g04240.v2.2, Sp5g12630.v2.2, Sp6g06960.v2.2, Sp6g28450.v2.2, Sp7g04870.v2.2, Sp7g24400.v2.2, SpUn0074_0030.v2.2
Brassicaceae	Brassica nigra	133	BniB01g001870.2N, BniB01g010610.2N, BniB01g010810.2N ... BniB01g010850.2N, BniB01g011630.2N, BniB01g011970.2N, BniB01g011990.2N, BniB01g012020.2N, BniB01g012030.2N, BniB01g012090.2N, BniB01g012190.2N, BniB01g012500.2N, BniB01g012530.2N, BniB01g012540.2N, BniB01g012580.2N, BniB01g012950.2N, BniB01g012960.2N, BniB01g012970.2N, BniB01g021660.2N, BniB01g022210.2N, BniB01g022230.2N, BniB01g039610.2N, BniB01g039740.2N, BniB01g044180.2N, BniB01g050970.2N, BniB01g057440.2N, BniB01g059090.2N, BniB01g059700.2N, BniB02g004780.2N, BniB02g010580.2N, BniB02g014000.2N, BniB02g040900.2N, BniB02g047140.2N, BniB02g047180.2N, BniB02g047200.2N, BniB02g048060.2N, BniB02g054960.2N, BniB03g007790.2N, BniB03g010060.2N, BniB03g016980.2N, BniB03g020820.2N, BniB03g021720.2N, BniB03g021760.2N, BniB03g021770.2N, BniB03g021840.2N, BniB03g021860.2N, BniB03g021870.2N, BniB03g021880.2N, BniB03g034710.2N, BniB03g035320.2N, BniB03g035330.2N, BniB03g044450.2N, BniB03g045100.2N, BniB03g045220.2N, BniB03g045230.2N, BniB03g054750.2N, BniB03g058220.2N, BniB04g020390.2N, BniB04g024890.2N, BniB04g041620.2N, BniB04g041640.2N, BniB04g042790.2N, BniB04g042820.2N, BniB04g048150.2N, BniB04g048180.2N, BniB04g048190.2N, BniB04g048230.2N, BniB04g048270.2N, BniB04g048310.2N, BniB04g048330.2N, BniB04g058760.2N, BniB04g059420.2N, BniB04g059450.2N, BniB04g059480.2N, BniB04g059530.2N, BniB04g063630.2N, BniB04g063660.2N, BniB05g009930.2N, BniB05g014560.2N, BniB05g014640.2N, BniB05g014690.2N, BniB05g015540.2N, BniB05g021300.2N, BniB05g021310.2N, BniB05g023670.2N, BniB05g029010.2N, BniB05g041450.2N, BniB05g041520.2N, BniB05g060990.2N, BniB05g061010.2N, BniB05g063190.2N, BniB05g063210.2N, BniB06g005790.2N, BniB06g010060.2N, BniB06g011060.2N, BniB06g012790.2N, BniB06g020540.2N, BniB06g020770.2N, BniB06g020900.2N, BniB06g021130.2N, BniB06g021210.2N, BniB06g021220.2N, BniB06g021460.2N, BniB06g023660.2N, BniB06g026800.2N, BniB06g027740.2N, BniB06g030160.2N, BniB06g047600.2N, BniB06g048710.2N, BniB06g057550.2N, BniB06g064680.2N, BniB07g009330.2N, BniB07g045510.2N, BniB07g058650.2N, BniB07g059370.2N, BniB08g010950.2N, BniB08g011400.2N, BniB08g020060.2N, BniB08g020740.2N, BniB08g028950.2N, BniB08g028960.2N, BniB08g028980.2N, BniB08g028990.2N, BniB08g035250.2N, BniB08g035280.2N, BniB08g035330.2N, BniB08g043500.2N, BniB08g063050.2N, BniB08g063070.2N, BniB08g063540.2N, BniB08g073170.2N, BniS25022g010.2N, BniS25022g030.2N
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.1335, evm.TU.LG03.15
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.21, evm.TU.Scaffold_17_RagTag.985
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-23706, nbisL1-mrna-26307, nbisL1-mrna-30200
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000001l.7
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11705
Salicaceae	Populus euphratica	2	populus_peu06950, populus_peu07295
Solanaceae	Lycium barbarum	22	gene-LOC132600137, gene-LOC132605467, gene-LOC132607283 ... gene-LOC132608325, gene-LOC132611684, gene-LOC132612846, gene-LOC132617929, gene-LOC132619462, gene-LOC132619467, gene-LOC132620162, gene-LOC132620204, gene-LOC132623533, gene-LOC132624756, gene-LOC132628532, gene-LOC132628536, gene-LOC132629295, gene-LOC132629297, gene-LOC132637129, gene-LOC132639897, gene-LOC132639898, gene-LOC132639900, gene-LOC132641865
Solanaceae	Solanum chilense	4	SOLCI002533700, SOLCI002640100, SOLCI003759200 ... SOLCI005659900
Solanaceae	Solanum pennellii	10	gene-LOC107016884, gene-LOC107020295, gene-LOC107030852 ... gene-LOC114075240, gene-LOC114075356, gene-LOC114075587, gene-LOC114075617, gene-LOC114075656, gene-LOC114076467, gene-LOC114076739