Basic Information
Locus ID:
BniB06g029140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
leucine-rich repeat protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 19050992 | 19053683 | - | BniB06g029140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 34,501.45 Da | 34.24 | 99.34 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 144 | 241 | 3.1E-13 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 70 | 130 | 9.9E-9 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 70 | 291 | 2.16E-44 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 73 | 132 | 7.7E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 133 | 302 | 3.6E-32 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 66 | 303 | 18.068213 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51620.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_018488115.1 | PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like protein kinase At1g51890 [Raphanus sativus] | 0 |
| Q9C8I6 | LRR receptor-like serine/threonine-protein kinase IOS1 OS=Arabidopsis thaliana OX=3702 GN=IOS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0NUM1 | LOW QUALITY PROTEIN: probable LRR receptor-like protein kinase At1g51890 OS=Raphanus sativus OX=3726 GN=LOC108858731 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G51620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011641m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g38260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g058380.2N, BniB06g029140.2N |