Basic Information
Locus ID:
BniB06g029100.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitogen-activated protein kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 19014117 | 19024315 | - | BniB06g029100.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 83,452.85 Da | 54.32 | 85.80 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12153 | F1-ATPase_epsilon | 9 | 53 | 5.38441E-21 | IPR006721 |
| CDD | cd06623 | PKc_MAPKK_plant_like | 133 | 392 | 3.38778E-138 | - |
| CDD | cd06623 | PKc_MAPKK_plant_like | 479 | 733 | 1.85507E-113 | - |
| Pfam | PF04627 | Mitochondrial ATP synthase epsilon chain | 9 | 56 | 1.2E-21 | IPR006721 |
| Pfam | PF00069 | Protein kinase domain | 138 | 390 | 1.4E-65 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 484 | 732 | 1.6E-57 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 479 | 748 | 1.89E-71 | IPR011009 |
| SUPERFAMILY | SSF48690 | Epsilon subunit of mitochondrial F1F0-ATP synthase | 7 | 53 | 6.15E-16 | IPR036742 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 133 | 427 | 2.02E-79 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 122 | 213 | 3.8E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 214 | 398 | 7.7E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 465 | 560 | 8.3E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 563 | 746 | 6.9E-46 | - |
| Gene3D | G3DSA:1.10.1620.20 | ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial | 9 | 64 | 1.1E-22 | IPR036742 |
| SMART | SM00220 | serkin_6 | 481 | 732 | 1.8E-77 | IPR000719 |
| SMART | SM00220 | serkin_6 | 135 | 390 | 1.0E-88 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 481 | 732 | 43.72142 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 135 | 390 | 46.505821 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 141 | 164 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 248 | 260 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51660.1 | mitogen-activated protein kinase kinase 4. Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission. | 0 |
| RefSeq | XP_013726826.1 | mitogen-activated protein kinase kinase 4 [Brassica napus] | 0 |
| O80397 | Mitogen-activated protein kinase kinase 4 OS=Arabidopsis thaliana OX=3702 GN=MKK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B8C4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology