Basic Information
Locus ID:
BniB06g028750.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 18635638 | 18636310 | + | BniB06g028750.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 13,624.48 Da | 67.76 | 72.48 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 72 | 114 | 2.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 62 | 119 | 1.55E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 120 | 6.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 72 | 113 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 114 | 13.477729 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51930.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013589141.1 | PREDICTED: RING-H2 zinc finger protein RHA4a [Brassica oleracea var. oleracea] | 0 |
| Q9LQM2 | RING-H2 finger protein ATL81 OS=Arabidopsis thaliana OX=3702 GN=ATL81 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WFI8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_011035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G51930.1, AT5G41430.1, AT5G41440.1, AT5G41450.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10011950m.g.v1.0, Thhalv10011984m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 2 | BniB06g028750.2N, BniB07g004040.2N |