Basic Information
Locus ID:
BniB06g027650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 17280900 | 17286419 | - | BniB06g027650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 127,194.73 Da | 42.97 | 87.02 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00165 | S4 | 1076 | 1139 | 1.7535E-11 | IPR002942 |
| Pfam | PF01479 | S4 domain | 1076 | 1121 | 3.0E-8 | IPR002942 |
| Pfam | PF00400 | WD domain, G-beta repeat | 668 | 704 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 560 | 599 | 7.2E-5 | IPR001680 |
| Pfam | PF17774 | Putative RNA-binding domain in YlmH | 983 | 1055 | 5.1E-13 | IPR040591 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 478 | 806 | 1.83E-51 | IPR036322 |
| SUPERFAMILY | SSF55174 | Alpha-L RNA-binding motif | 956 | 1139 | 1.83E-21 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 60 | 258 | 5.56E-15 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 452 | 810 | 2.7E-115 | IPR015943 |
| Gene3D | G3DSA:3.10.290.10 | - | 1069 | 1126 | 1.1E-7 | IPR036986 |
| Gene3D | G3DSA:3.30.1370.160 | - | 904 | 969 | 3.3E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 71 | 279 | 3.6E-21 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 976 | 1057 | 1.6E-21 | IPR012677 |
| SMART | SM00320 | WD40_4 | 666 | 704 | 9.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 556 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 506 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 752 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 662 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 768 | 807 | 39.0 | IPR001680 |
| SMART | SM00363 | s4_6 | 1075 | 1135 | 4.7E-11 | IPR002942 |
| SMART | SM00320 | WD40_4 | 559 | 599 | 2.2E-8 | IPR001680 |
| TIGRFAM | TIGR03069 | PS_II_S4: photosystem II S4 domain protein | 905 | 1148 | 4.1E-100 | IPR017506 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 272 | 10.492389 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 673 | 706 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50889 | S4 RNA-binding domain profile. | 1075 | 1141 | 13.689151 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 673 | 706 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 566 | 601 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 566 | 608 | 12.847725 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 691 | 705 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 691 | 705 | 9.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 543 | 557 | 9.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 586 | 600 | 9.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 158 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_013592217.1 | PREDICTED: protein SPA1-RELATED 4 [Brassica oleracea var. oleracea] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8D9DDL9 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A05P19260.2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology