Basic Information
Locus ID:
BniB06g027290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 16945123 | 16945752 | + | BniB06g027290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 24,049.70 Da | 53.88 | 84.40 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 162 | 203 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 139 | 207 | 2.65E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 208 | 5.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 162 | 202 | 2.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 162 | 203 | 13.123657 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13228.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048628173.1 | E3 ubiquitin-protein ligase MPSR1-like [Brassica napus] | 0 |
| Q852U6 | Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BB60 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18760.1, AT1G21960.1, AT3G13228.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009703m.g.v1.0, Thhalv10010983m.g.v1.0 |
| Brassicaceae | Brassica nigra | 7 | BniB03g007820.2N, BniB03g007840.2N, BniB04g033350.2N ... |