Basic Information
Locus ID:
BniB06g026810.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 16375125 | 16376072 | - | BniB06g026810.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 35,238.01 Da | 46.12 | 78.19 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 119 | 162 | 5.73584E-18 | - |
| Pfam | PF13639 | Ring finger domain | 119 | 162 | 6.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 169 | 8.72E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 167 | 4.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 3.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.061441 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013591363.1 | PREDICTED: RING-H2 finger protein ATL60 [Brassica oleracea var. oleracea] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WED2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010887 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology