halophFGD

Basic Information

Locus ID: BniB06g026270.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B6	15871093	15872994	-	BniB06g026270.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.24	27,615.64 Da	49.23	96.30	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K00600 (glycine hydroxymethyltransferase [EC:2.1.2.1])

Pathway:

ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00460 (Cyanoamino acid metabolism) map00460 (Cyanoamino acid metabolism) ko00630 (Glyoxylate and dicarboxylate metabolism) map00630 (Glyoxylate and dicarboxylate metabolism) ko00670 (One carbon pool by folate) map00670 (One carbon pool by folate) ko00680 (Methane metabolism) map00680 (Methane metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids) ko01523 (Antifolate resistance) map01523 (Antifolate resistance)

Module:

M00140 (C1-unit interconversion, prokaryotes) M00141 (C1-unit interconversion, eukaryotes) M00346 (Formaldehyde assimilation, serine pathway) M00532 (Photorespiration)

Reaction:

R00945 (5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine) R09099 (L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G55160.2
RefSeq	XP_013625748.1	PREDICTED: uncharacterized protein LOC106331864 [Brassica oleracea var. oleracea]
TrEMBL	A0A8X7WC61	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010841 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg15433, jg18060, jg25244, jg3885
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11049, gene_6776
Amaranthaceae	Atriplex hortensis	2	Ah015360, Ah028896
Amaranthaceae	Beta vulgaris	1	BVRB_7g176690
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg25353, Sbi_jg27011, Sbi_jg33542, Sbi_jg9205
Amaranthaceae	Salicornia europaea	2	Seu_jg19382, Seu_jg8243
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002924, GOSA_00011151
Amaranthaceae	Suaeda glauca	5	Sgl42902, Sgl47665, Sgl47694, Sgl73257, Sgl76776
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000038041, gene:ENSEOMG00000038979 ... gene:ENSEOMG00000044411, gene:ENSEOMG00000045793
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0000390, CQ.Regalona.r1.8AG0014300 ... CQ.Regalona.r1.8BG0015670, CQ.Regalona.r1.9BG0005380
Anacardiaceae	Pistacia vera	2	pistato.v30116610, pistato.v30117030
Arecaceae	Cocos nucifera	2	COCNU_06G001770, COCNU_14G000270
Arecaceae	Phoenix dactylifera	2	gene-LOC103712855, gene-LOC103720228
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.2991.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G12932, Ftri4G01160
Brassicaceae	Arabidopsis thaliana	2	AT1G55160.3, AT2G19530.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011806m.g.v1.0, Thhalv10022851m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g40820.v2.2
Brassicaceae	Brassica nigra	4	BniB02g015650.2N, BniB03g068860.2N, BniB06g026270.2N ... BniB07g001410.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G0880
Casuarinaceae	Casuarina glauca	2	Cgl02G0891, Cgl06G0886
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g15510
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4588
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.1232
Plantaginaceae	Plantago ovata	2	Pov_00002927, Pov_00015229
Plumbaginaceae	Limonium bicolor	3	Lb0G37511, Lb4G25471, Lb5G27462
Poaceae	Echinochloa crus-galli	6	AH02.2117, BH02.2186, BH05.1209, CH01.2701, CH02.2340 ... CH05.1499
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0021850, gene-QOZ80_1BG0071780 ... gene-QOZ80_5AG0360940, gene-QOZ80_5BG0409390
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0094770.1, HORVU.MOREX.r3.3HG0267510.1
Poaceae	Oryza coarctata	3	Oco01G013160, Oco02G013320, Oco09G018420
Poaceae	Oryza sativa	2	LOC_Os01g39780.1, LOC_Os05g51540.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G173000, gene-BS78_09G259000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505898, Pt_Chr0603109
Poaceae	Sporobolus alterniflorus	5	Chr05G016980, Chr08G009930, Chr0G020340, Chr0G029970 ... Chr18G015840
Poaceae	Thinopyrum elongatum	2	Tel1E01G745400, Tel3E01G362300
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG031020, gene_TRIDC3BG035660
Poaceae	Triticum aestivum	6	TraesCS1A02G439600.1, TraesCS1B02G474900.2 ... TraesCS1D02G448800.1, TraesCS3A02G208400.1, TraesCS3B02G235400.1, TraesCS3D02G211200.2
Poaceae	Zea mays	3	Zm00001eb094060_P001, Zm00001eb297270_P001 ... Zm00001eb357050_P001
Poaceae	Zoysia japonica	2	nbis-gene-13523, nbis-gene-21561
Poaceae	Zoysia macrostachya	2	Zma_g10395, Zma_g27487
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.1588, evm.TU.LG19.341, evm.TU.LG22.483 ... evm.TU.LG24.206
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g14640
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1355 ... evm.TU.Scaffold_10_RagTag.509, evm.TU.Scaffold_18_RagTag.655
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13012, nbisL1-mrna-27673, nbisL1-mrna-7084
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12762, nbisL1-mrna-8079, nbisL1-mrna-8080
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16898, nbisL1-mrna-8766
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.74, evm.TU.utg000023l.64 ... evm.TU.utg000033l.353
Rhizophoraceae	Kandelia obovata	3	Maker00004264, Maker00015126, Maker00018892
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16454, nbisL1-mrna-4028, nbisL1-mrna-7409
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17915, nbisL1-mrna-24275, nbisL1-mrna-8197
Salicaceae	Populus euphratica	2	populus_peu02630, populus_peu11947
Solanaceae	Lycium barbarum	2	gene-LOC132603713, gene-LOC132633460
Solanaceae	Solanum chilense	1	SOLCI005558000
Solanaceae	Solanum pennellii	2	gene-LOC107007430, gene-LOC107012710
Tamaricaceae	Reaumuria soongarica	2	STRG.21450_chr09_-, gene_10022
Tamaricaceae	Tamarix chinensis	2	TC08G1681, TC12G1176
Zosteraceae	Zostera marina	1	Zosma01g22650.v3.1