Basic Information
Locus ID:
BniB06g025750.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 15564764 | 15565844 | - | BniB06g025750.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 22,363.73 Da | 39.16 | 84.63 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 44 | 118 | 3.3E-7 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 39 | 125 | 1.29E-14 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 32 | 139 | 2.1E-10 | IPR036431 |
| SMART | SM01014 | ARID_2 | 37 | 118 | 9.3E-10 | - |
| SMART | SM00501 | bright_3 | 41 | 123 | 1.0E-11 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55650.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_048634925.1 | putative high mobility group B protein 11 [Brassica napus] | 0 |
| Q9LG02 | Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMGB11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7WCD8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010807 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology