Basic Information
Locus ID:
BniB06g025700.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CAX5
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 15466756 | 15469262 | + | BniB06g025700.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 47,736.25 Da | 35.59 | 112.68 | 0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 289 | 427 | 1.6E-17 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 98 | 253 | 2.5E-21 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 127 | 267 | 6.6E-16 | IPR044880 |
| Gene3D | G3DSA:1.20.1420.30 | - | 274 | 431 | 3.1E-19 | IPR044880 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 63 | 430 | 1.8E-120 | - |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 79 | 430 | 5.0E-103 | IPR004798 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55730.1 | cation exchanger 5. member of Low affinity calcium antiporter CAX2 family | 0 |
| RefSeq | XP_024006221.1 | vacuolar cation/proton exchanger 5 isoform X1 [Eutrema salsugineum] | 0 |
| Q8L783 | Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana OX=3702 GN=CAX5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WEK0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010804 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology