Basic Information
Locus ID:
BniB06g025480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 15317499 | 15319488 | + | BniB06g025480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 57,589.83 Da | 44.48 | 82.38 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 431 | 472 | 1.7817E-25 | - |
| Pfam | PF04564 | U-box domain | 428 | 492 | 1.1E-15 | IPR003613 |
| Pfam | PF02854 | MIF4G domain | 21 | 159 | 3.1E-8 | IPR003890 |
| SUPERFAMILY | SSF48371 | ARM repeat | 14 | 196 | 7.48E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 421 | 494 | 1.41E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 426 | 495 | 5.3E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.40.180 | - | 12 | 227 | 6.1E-21 | IPR016021 |
| SMART | SM00543 | if4_15 | 20 | 257 | 1.1E-12 | IPR003890 |
| SMART | SM00504 | Ubox_2 | 430 | 493 | 2.0E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 426 | 495 | 38.657475 | IPR003613 |
| Coils | Coil | Coil | 372 | 420 | - | - |
| Coils | Coil | Coil | 211 | 231 | - | - |
| Coils | Coil | Coil | 281 | 350 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56040.1 | HEAT/U-box domain-containing protein. | 0 |
| RefSeq | XP_013590299.1 | PREDICTED: putative U-box domain-containing protein 58 [Brassica oleracea var. oleracea] | 0 |
| Q9SGT2 | Putative U-box domain-containing protein 58 OS=Arabidopsis thaliana OX=3702 GN=PUB58 PE=3 SV=3 | 0 | |
| TrEMBL | A0A8X8BB66 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010786 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G56030.1, AT1G56040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012353m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g025480.2N |
| Poaceae | Oryza coarctata | 1 | Oco11G002870 |