Basic Information
Locus ID:
BniB06g023500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 13760010 | 13760887 | + | BniB06g023500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 26,997.14 Da | 46.48 | 79.02 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 123 | 182 | 4.69794E-10 | - |
| Pfam | PF12906 | RING-variant domain | 123 | 181 | 2.3E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 184 | 1.29E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 192 | 2.6E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 122 | 182 | 4.8E-9 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 115 | 188 | 17.556322 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 59 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_018437626.1 | PREDICTED: uncharacterized protein LOC108809994 [Raphanus sativus] | 0 |
| TrEMBL | A0A8X7WBT0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010616 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology