Basic Information
Locus ID:
BniB06g022290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 12799537 | 12802723 | - | BniB06g022290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 97,383.11 Da | 46.24 | 71.63 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 590 | 847 | 3.03297E-105 | - |
| CDD | cd06410 | PB1_UP2 | 94 | 189 | 1.46411E-40 | - |
| Pfam | PF00564 | PB1 domain | 106 | 190 | 4.0E-16 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 587 | 847 | 3.0E-62 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 575 | 847 | 9.31E-74 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 107 | 198 | 8.34E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 110 | 192 | 2.0E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 577 | 671 | 2.7E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 672 | 864 | 2.2E-51 | - |
| SMART | SM00220 | serkin_6 | 584 | 850 | 2.0E-53 | IPR000719 |
| SMART | SM00666 | PB1_new | 105 | 192 | 1.3E-26 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 584 | 849 | 40.498871 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 590 | 611 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 709 | 721 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 666 | 679 | 1.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 818 | 840 | 1.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 774 | 796 | 1.7E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 703 | 721 | 1.7E-13 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04700.1 | PB1 domain-containing protein tyrosine kinase. | 0 |
| RefSeq | XP_009143890.1 | uncharacterized protein LOC103867564 [Brassica rapa] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WDP1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010527 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology