Basic Information
Locus ID:
BniB06g022140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc knuckle (CCHC-type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 12723496 | 12725320 | + | BniB06g022140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 48,783.49 Da | 51.37 | 61.79 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14273 | UBA_TAP-C_like | 9 | 36 | 0.0080892 | - |
| CDD | cd14273 | UBA_TAP-C_like | 67 | 96 | 4.40132E-9 | - |
| Pfam | PF14555 | UBA-like domain | 62 | 96 | 8.8E-11 | - |
| Pfam | PF14555 | UBA-like domain | 223 | 263 | 2.5E-7 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 61 | 97 | 1.11E-6 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 216 | 261 | 2.27E-7 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 218 | 265 | 3.7E-11 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 60 | 98 | 9.9E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 300 | 419 | 2.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33000.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein-related. | 0 |
| RefSeq | XP_013635534.1 | PREDICTED: uncharacterized protein LOC106341277 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8X8BA85 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G33000.1, AT2G33010.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017579m.g.v1.0, Thhalv10017728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15370.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g022110.2N, BniB06g022130.2N, BniB06g022140.2N ... |