Basic Information
Locus ID:
BniB06g022130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc knuckle (CCHC-type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 12718483 | 12721030 | + | BniB06g022130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 62,420.30 Da | 50.80 | 75.78 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14273 | UBA_TAP-C_like | 270 | 299 | 4.44975E-4 | - |
| CDD | cd14352 | UBA_DCN1 | 59 | 95 | 1.39959E-7 | - |
| Pfam | PF14555 | UBA-like domain | 59 | 98 | 2.5E-5 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 50 | 99 | 2.1E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 477 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33000.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein-related. | 0 |
| RefSeq | XP_048636706.1 | uncharacterized protein LOC111215588 [Brassica napus] | 0 |
| TrEMBL | A0A8X8B7R4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010517 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G33000.1, AT2G33010.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017579m.g.v1.0, Thhalv10017728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15370.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g022110.2N, BniB06g022130.2N, BniB06g022140.2N ... |