Basic Information
Locus ID:
BniB06g022110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ctc-interacting domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 12711691 | 12714057 | + | BniB06g022110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 45,020.63 Da | 53.59 | 75.82 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14555 | UBA-like domain | 69 | 107 | 1.0E-4 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 60 | 113 | 2.7E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 59 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022574990.2 | uncharacterized protein LOC111215586 isoform X2 [Brassica napus] | 0 |
| TrEMBL | A0A8X8BAS3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010515 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G33000.1, AT2G33010.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017579m.g.v1.0, Thhalv10017728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15370.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g022110.2N, BniB06g022130.2N, BniB06g022140.2N ... |