Basic Information
Locus ID:
BniB06g021800.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 12485693 | 12489873 | + | BniB06g021800.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 85,814.11 Da | 53.71 | 62.87 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 500 | 787 | 8.00082E-78 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 586 | 622 | 0.0091 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 550 | 578 | 8.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 753 | 787 | 0.012 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 536 | 6.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 670 | 704 | 1.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 499 | 787 | 3.48E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 636 | 787 | 1.9E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 479 | 635 | 1.1E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 497 | 536 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 625 | 663 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 748 | 787 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 578 | 6.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 707 | 746 | 0.75 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 2.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 582 | 622 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 666 | 704 | 4.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 673 | 713 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 546 | 578 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 546 | 578 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 673 | 708 | 9.441055 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 589 | 624 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 504 | 539 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 589 | 631 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 755 | 787 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 755 | 787 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.821852 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 504 | 539 | 11.009724 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 523 | 537 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 565 | 579 | 7.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 774 | 787 | 7.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 523 | 537 | 7.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 405 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_013692130.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Brassica napus] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BBA5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology