Basic Information
Locus ID:
BniB06g021700.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Proteinaceous RNase P 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 12406099 | 12408235 | + | BniB06g021700.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 65,042.60 Da | 51.98 | 74.54 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18671 | PIN_PRORP-Zc3h12a-like | 397 | 520 | 7.93343E-72 | - |
| Pfam | PF16953 | Protein-only RNase P | 339 | 566 | 5.5E-76 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 88 | 299 | 9.7E-79 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 96 | 569 | 2.7E-239 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 357 | 532 | 2.7E-239 | - |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 104 | 130 | 0.0028 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 211 | 245 | 8.604678 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_009143953.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Brassica rapa] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WBL2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology