Basic Information
Locus ID:
BniB06g021050.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 12054937 | 12056085 | + | BniB06g021050.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 32,401.48 Da | 55.62 | 101.32 | 0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 223 | 264 | 1.9E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 202 | 271 | 9.03E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 271 | 7.1E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 222 | 265 | 0.0071 | IPR011016 |
| SMART | SM00184 | ring_2 | 223 | 264 | 1.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 223 | 264 | 11.264779 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013691441.2 | E3 ubiquitin-protein ligase At1g12760 [Brassica napus] | 0 |
| Q8RX29 | RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6C8Q7 | RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC4T23314H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g021050.2N |