Basic Information
Locus ID:
BniB06g020580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 11693340 | 11700633 | - | BniB06g020580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 101,893.14 Da | 50.13 | 73.83 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01837 | SGNH_plant_lipase_like | 34 | 350 | 1.36305E-132 | IPR035669 |
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 481 | 531 | 8.50053E-17 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 550 | 612 | 1.1E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 629 | 677 | 2.6E-9 | IPR002867 |
| Pfam | PF00657 | GDSL-like Lipase/Acylhydrolase | 37 | 350 | 3.9E-32 | IPR001087 |
| SUPERFAMILY | SSF57850 | RING/U-box | 631 | 679 | 5.08E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 476 | 562 | 2.59E-17 | - |
| SUPERFAMILY | SSF52266 | SGNH hydrolase | 38 | 350 | 3.85E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 551 | 619 | 4.24E-12 | - |
| Gene3D | G3DSA:3.40.50.1110 | SGNH hydrolase | 22 | 353 | 2.0E-71 | IPR036514 |
| Gene3D | G3DSA:1.20.120.1750 | - | 608 | 863 | 1.4E-84 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 475 | 564 | 2.4E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 625 | 686 | 0.088 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 550 | 612 | 7.6E-24 | IPR002867 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | 5.0 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 481 | 525 | 9.553431 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 477 | 690 | 51.483513 | IPR044066 |
| Coils | Coil | Coil | 691 | 711 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_006410286.1 | probable E3 ubiquitin-protein ligase ARI7 [Eutrema salsugineum] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8BAN5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010395 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology