Basic Information
Locus ID:
BniB06g020570.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CPK24
Description:
ATP binding calcium ion binding calmodulin-dependent protein kinase kinase protein kinase protein serine threonine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 11690581 | 11692845 | + | BniB06g020570.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 66,226.95 Da | 43.41 | 79.93 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 67 | 325 | 2.16059E-131 | - |
| Pfam | PF00069 | Protein kinase domain | 68 | 326 | 1.7E-76 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 444 | 509 | 7.4E-11 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 386 | 433 | 1.2E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 354 | 521 | 2.05E-40 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 67 | 327 | 7.42E-85 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 154 | 347 | 1.3E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 348 | 508 | 3.0E-47 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 367 | 435 | 3.0E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 70 | 153 | 3.6E-27 | - |
| SMART | SM00054 | efh_1 | 409 | 437 | 0.023 | IPR002048 |
| SMART | SM00054 | efh_1 | 445 | 473 | 1.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 373 | 401 | 8.5E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 68 | 326 | 1.5E-100 | IPR000719 |
| SMART | SM00054 | efh_1 | 483 | 511 | 1.1E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 405 | 440 | 10.245409 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 68 | 326 | 49.742504 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 441 | 476 | 13.286007 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 479 | 514 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 369 | 404 | 14.876045 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 188 | 200 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 418 | 430 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 492 | 504 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 454 | 466 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 74 | 97 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 382 | 394 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 44 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_006410285.1 | calcium-dependent protein kinase 24 isoform X1 [Eutrema salsugineum] | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WD80 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010394 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology