halophFGD

Basic Information

Locus ID: BniB06g018860.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: ABC transporter E family member

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B6	10595035	10595646	+	BniB06g018860.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.19	23,680.54 Da	61.98	76.80	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	3	42	7.6E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	3	92	7.06E-15	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	61	1.5E-5	-
SMART	SM00256	fbox_2	7	47	0.0072	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	90	184	1.1E-20	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K06174 (ATP-binding cassette, sub-family E, member 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G20030.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_018436265.1	PREDICTED: putative F-box protein At3g20030 [Raphanus sativus]
Swiss-Prot	Q9LJZ8	Putative F-box protein At3g20030 OS=Arabidopsis thaliana OX=3702 GN=At3g20030 PE=4 SV=1
TrEMBL	A0A6J0JKT7	putative F-box protein At3g20030 OS=Raphanus sativus OX=3726 GN=LOC108808650 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N