Basic Information
Locus ID:
BniB06g016810.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 8789156 | 8794780 | - | BniB06g016810.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 114,064.98 Da | 44.46 | 72.83 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 371 | 426 | 6.5E-12 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 652 | 694 | 6.2E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 586 | 636 | 3.8E-17 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 646 | 697 | 1.46E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 901 | 987 | 7.68E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 738 | 795 | 1.73E-8 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 849 | 1011 | 4.7E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 740 | 801 | 1.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 640 | 720 | 8.0E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 741 | 798 | 0.0074 | IPR001965 |
| SMART | SM00249 | PHD_3 | 652 | 693 | 8.7E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 650 | 695 | 9.9795 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 653 | 692 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 547 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_013647659.2 | uncharacterized protein LOC106352584 isoform X3 [Brassica napus] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B9U6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010128 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology