Basic Information
Locus ID:
BniB06g016790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 8772843 | 8774157 | - | BniB06g016790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 48,117.06 Da | 49.16 | 88.24 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 212 | 341 | 4.2E-5 | IPR006527 |
| Pfam | PF00646 | F-box domain | 15 | 49 | 4.7E-8 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 26 | 295 | 1.96E-8 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 59 | 5.49E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 51 | 1.9E-6 | - |
| SMART | SM00256 | fbox_2 | 14 | 53 | 4.4E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 102 | 297 | 3.1E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 53 | 8.782121 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49790.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_013635731.1 | PREDICTED: F-box/LRR-repeat protein At2g43260-like [Brassica oleracea var. oleracea] | 0 |
| Q8S8Q9 | F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana OX=3702 GN=At2g43260 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B7F2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010127 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G49790.2, AT2G30615.1, AT2G42955.1, AT2G43260.1 ... |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10001524m.g.v1.0, Thhalv10005447m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g31660.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g002760.2N, BniB01g011350.2N, BniB02g072460.2N ... |