Basic Information
Locus ID:
BniB06g016760.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 8744751 | 8748336 | - | BniB06g016760.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 94,074.14 Da | 64.98 | 64.00 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 780 | 818 | 2.48596E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 778 | 822 | 1.6E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 779 | 825 | 4.01E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 755 | 830 | 3.5E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 780 | 819 | 10.409105 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 154 | - | - |
| Coils | Coil | Coil | 708 | 728 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_018439176.1 | PREDICTED: uncharacterized protein LOC108811610 [Raphanus sativus] | 0 |
| TrEMBL | A0A8X7WCM9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology