Basic Information
Locus ID:
BniB06g016270.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 8439523 | 8440503 | + | BniB06g016270.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 25,355.77 Da | 37.15 | 84.18 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1 | 219 | 4.3E-55 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 2 | 214 | 4.19E-62 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 112 | 219 | 3.9E-30 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1 | 111 | 1.0E-21 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 14 | 76 | 1.0E-21 | - |
| SMART | SM00119 | hect_3 | 1 | 220 | 3.9E-19 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1 | 220 | 46.414883 | IPR000569 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70320.1 | ubiquitin-protein ligase 2. encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_048603711.1 | E3 ubiquitin-protein ligase HUWE1-like [Brassica napus] | 0 |
| Q7Z6Z7 | E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens OX=9606 GN=HUWE1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X8B9S6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010068 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||