Basic Information
Locus ID:
BniB06g015870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Receptor homology region transmembrane domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 8125803 | 8127047 | - | BniB06g015870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 33,650.24 Da | 48.73 | 91.50 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 227 | 270 | 6.15192E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 15 | 151 | 1.45496E-43 | IPR044744 |
| Pfam | PF02225 | PA domain | 72 | 138 | 2.8E-7 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 226 | 270 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 76 | 115 | 1.7E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 222 | 276 | 2.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 280 | 1.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 19 | 148 | 5.9E-24 | - |
| SMART | SM00184 | ring_2 | 228 | 269 | 4.3E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 270 | 12.84335 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 306 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.1 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_013653732.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Brassica napus] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WAV5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010046 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology