Basic Information
Locus ID:
BniB06g015670.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains Glycoside hydrolase, family 18, catalytic domain (InterPro IPR001223), Chitinase II (InterPro IPR011583), Glycoside hydrolase, catalytic core (InterPro IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro IPR013781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 8016099 | 8017552 | - | BniB06g015670.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 37,242.48 Da | 51.38 | 77.19 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 21 | 285 | 4.6E-47 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 29 | 267 | 6.44E-44 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 15 | 284 | 8.1E-57 | - |
| SMART | SM00636 | 2g34 | 16 | 330 | 9.8E-28 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 16 | 331 | 37.440704 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 331 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_010434362.1 | PREDICTED: chitotriosidase-1 [Camelina sativa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BAV7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010025 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology