Basic Information
Locus ID:
BniB06g015480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 7918827 | 7925810 | - | BniB06g015480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 140,771.27 Da | 47.43 | 79.25 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 457 | 512 | 3.10259E-18 | - |
| Pfam | PF12315 | Protein DA1 | 599 | 794 | 1.9E-87 | IPR022087 |
| Pfam | PF12315 | Protein DA1 | 1192 | 1219 | 2.0E-4 | IPR022087 |
| Pfam | PF00412 | LIM domain | 457 | 497 | 1.3E-7 | IPR001781 |
| Pfam | PF05659 | Arabidopsis broad-spectrum mildew resistance protein RPW8 | 809 | 946 | 1.1E-38 | IPR008808 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 453 | 482 | 7.68E-5 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 961 | 1096 | 7.92E-17 | IPR027417 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 438 | 515 | 5.2E-8 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 959 | 1108 | 3.7E-15 | IPR027417 |
| SMART | SM00132 | lim_4 | 456 | 511 | 0.0033 | IPR001781 |
| ProSiteProfiles | PS51153 | RPW8 domain profile. | 803 | 957 | 24.42597 | IPR008808 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 455 | 526 | 10.2664 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 457 | 491 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 272 | - | - |
| Coils | Coil | Coil | 320 | 340 | - | - |
| Coils | Coil | Coil | 262 | 282 | - | - |
| Coils | Coil | Coil | 66 | 93 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66620.3 | - | 0 |
| RefSeq | XP_018438335.1 | PREDICTED: protein DA1-related 6-like isoform X2 [Raphanus sativus] | 0 |
| Q9FJX8 | Protein DA1-related 6 OS=Arabidopsis thaliana OX=3702 GN=DAR6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8B7B9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_010007 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology