Basic Information
Locus ID:
BniB06g014870.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 7615927 | 7616869 | + | BniB06g014870.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 20,949.01 Da | 48.68 | 78.13 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 136 | 178 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 136 | 180 | 8.39E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 181 | 1.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 137 | 177 | 4.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 178 | 12.740079 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018435250.1 | PREDICTED: E3 ubiquitin-protein ligase CIP8 [Raphanus sativus] | 0 |
| Q9FMM4 | Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0JKT6 | E3 ubiquitin-protein ligase CIP8 OS=Raphanus sativus OX=3726 GN=LOC108808619 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005473m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04390.v2.2, SpUn0426_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014870.2N |