Basic Information
Locus ID:
BniB06g014400.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 7346604 | 7348952 | + | BniB06g014400.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 63,550.44 Da | 51.74 | 86.14 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 125 | 1.56341E-45 | - |
| Pfam | PF03000 | NPH3 family | 198 | 444 | 7.1E-77 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 3.1E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 2.51E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 122 | 1.4E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 198 | 468 | 81.70607 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 98 | 10.054498 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 537 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 494 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67440.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_013593021.1 | PREDICTED: BTB/POZ domain-containing protein NPY3-like [Brassica oleracea var. oleracea] | 0 |
| Q9FN09 | Phototropic-responsive NPH3 family protein NPY3 OS=Arabidopsis thaliana OX=3702 GN=NPY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WAT2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009922 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology