Basic Information
Locus ID:
BniB06g013950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 7139514 | 7140961 | + | BniB06g013950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 36,176.64 Da | 46.28 | 72.21 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 59 | 320 | 3.5E-82 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 207 | 312 | 1.57E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 208 | 324 | 5.6E-39 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 211 | 313 | 23.400169 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 175 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65670.1 | indole-3-acetic acid inducible 9. auxin (indole-3-acetic acid) induced gene | 0 |
| RefSeq | XP_013630156.1 | PREDICTED: auxin-responsive protein IAA9 [Brassica oleracea var. oleracea] | 0 |
| Q38827 | Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7RTA6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_040316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology