Basic Information
Locus ID:
BniB06g013730.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 7011401 | 7014685 | + | BniB06g013730.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 86,283.29 Da | 55.26 | 72.62 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 362 | 662 | 6.5E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 81 | 118 | 2.8E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 358 | 666 | 5.1E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 78 | 119 | 2.09E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 355 | 677 | 2.9E-86 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 66 | 121 | 2.2E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 81 | 118 | 11.628593 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 362 | 665 | 49.559139 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 81 | 118 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 363 | 378 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 710 | - | - |
| Coils | Coil | Coil | 36 | 56 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.2 | - | 0 |
| RefSeq | XP_013643065.2 | ubiquitin carboxyl-terminal hydrolase 17 [Brassica napus] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397Z0E0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Brassica campestris OX=3711 GN=BRARA_F02412 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology