Basic Information
Locus ID:
BniB06g013440.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 6797552 | 6803543 | + | BniB06g013440.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 99,722.32 Da | 47.04 | 82.06 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00018 | AP2 | 660 | 719 | 4.32668E-28 | IPR001471 |
| CDD | cd00018 | AP2 | 86 | 145 | 2.67306E-31 | IPR001471 |
| Pfam | PF00646 | F-box domain | 243 | 279 | 1.2E-7 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 548 | 586 | 6.7E-8 | IPR005174 |
| Pfam | PF00847 | AP2 domain | 665 | 710 | 3.1E-11 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 88 | 136 | 2.8E-13 | IPR001471 |
| SUPERFAMILY | SSF81383 | F-box domain | 238 | 353 | 2.35E-10 | IPR036047 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 87 | 145 | 5.69E-21 | IPR016177 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 663 | 719 | 6.54E-18 | IPR016177 |
| Gene3D | G3DSA:1.20.1280.50 | - | 243 | 282 | 3.3E-7 | - |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 87 | 145 | 5.1E-25 | IPR036955 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 661 | 719 | 3.4E-22 | IPR036955 |
| SMART | SM00380 | rav1_2 | 87 | 150 | 1.1E-34 | IPR001471 |
| SMART | SM00256 | fbox_2 | 246 | 286 | 1.7E-4 | IPR001810 |
| SMART | SM00380 | rav1_2 | 661 | 724 | 1.1E-30 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 87 | 144 | 22.602674 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 661 | 718 | 20.586777 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 110 | 126 | 3.8E-10 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 88 | 99 | 3.8E-10 | IPR001471 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65130.2 | - | 0 |
| RefSeq | XP_006281629.2 | probable F-box protein At4g22165 [Capsella rubella] | 0 |
| Q9FJQ2 | Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana OX=3702 GN=ERF057 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7WDG0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009868 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 36 | AT1G10110.1, AT1G27540.1, AT1G27550.1, AT1G27580.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10002155m.g.v1.0, Thhalv10003011m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp3g02700.v2.2, Sp3g24140.v2.2, Sp3g33180.v2.2 ... |
| Brassicaceae | Brassica nigra | 32 | BniB01g011090.2N, BniB02g015840.2N, BniB02g015860.2N ... |