Basic Information
Locus ID:
BniB06g013260.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 6699062 | 6713154 | + | BniB06g013260.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 180,772.16 Da | 38.80 | 78.22 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10910 | PIN_limkain_b1_N_like | 820 | 944 | 6.70239E-42 | - |
| CDD | cd10910 | PIN_limkain_b1_N_like | 1038 | 1158 | 2.35777E-36 | - |
| CDD | cd04716 | BAH_plantDCM_I | 112 | 228 | 1.54032E-55 | - |
| Pfam | PF01936 | NYN domain | 1038 | 1158 | 1.0E-9 | IPR021139 |
| Pfam | PF01936 | NYN domain | 820 | 942 | 1.7E-10 | IPR021139 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 1210 | 1569 | 1.3E-34 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 415 | 776 | 5.7E-35 | IPR001525 |
| Pfam | PF01426 | BAH domain | 114 | 218 | 1.5E-8 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 354 | 404 | 2.2E-12 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 344 | 403 | 1.34E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 1226 | 1569 | 7.82E-55 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 242 | 776 | 1.17E-75 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 48 | 213 | 3.2E-46 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 568 | 742 | 1.7E-232 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1392 | 1496 | 1.1E-25 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1497 | 1588 | 6.5E-18 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1195 | 1391 | 6.6E-70 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 243 | 794 | 1.7E-232 | - |
| SMART | SM00439 | BAH_4 | 113 | 228 | 9.9E-11 | IPR001025 |
| SMART | SM00298 | chromo_7 | 353 | 408 | 1.2E-9 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 113 | 228 | 16.372543 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 1162 | 1576 | 37.48349 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 241 | 783 | 43.579983 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 354 | 403 | 13.390101 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 1236 | 1248 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 373 | 393 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 420 | 432 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 463 | 477 | 5.9E-9 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 242 | 258 | 5.9E-9 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 509 | 522 | 5.9E-9 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_048590849.1 | DNA (cytosine-5)-methyltransferase CMT3 [Brassica napus] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8B9J0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009843 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology