Basic Information
Locus ID:
BniB06g011980.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 6088755 | 6090633 | - | BniB06g011980.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 56,822.01 Da | 39.13 | 91.43 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 203 | 500 | 5.26925E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 467 | 500 | 1.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 201 | 237 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 418 | 456 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 198 | 500 | 1.47E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 464 | 504 | 1.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 194 | 463 | 3.8E-49 | IPR015943 |
| SMART | SM00320 | WD40_4 | 415 | 457 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 501 | 7.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 409 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 6.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 369 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 284 | 8.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 293 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 468 | 505 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 240 | 10.891048 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 468 | 505 | 13.738306 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 102 | 9.246705 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 252 | 285 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 240 | 13.11507 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 225 | 239 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 225 | 239 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 488 | 502 | 5.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 444 | 458 | 5.6E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_048637879.1 | WD repeat-containing protein 26 homolog isoform X1 [Brassica napus] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7WCK3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009739 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology