Basic Information
Locus ID:
BniB06g011560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
histone deacetylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 5889019 | 5891050 | - | BniB06g011560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 52,714.42 Da | 43.14 | 72.98 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 24 | 330 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 38 | 328 | 2.0E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 19 | 382 | 3.5E-126 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 10 | 396 | 1.5E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 3 | 466 | 2.2E-203 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 265 | 275 | 2.6E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 180 | 195 | 2.6E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 40 | 57 | 2.5E-60 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 148 | 171 | 2.6E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 226 | 239 | 2.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 126 | 146 | 2.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 73 | 91 | 2.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 243 | 261 | 2.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 105 | 122 | 2.5E-60 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 167 | 183 | 2.5E-60 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 470 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_018492345.1 | PREDICTED: histone deacetylase 6 [Raphanus sativus] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8B739 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009722 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology