Basic Information
Locus ID:
BniB06g009850.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 4905241 | 4909313 | - | BniB06g009850.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 91,288.21 Da | 41.45 | 85.50 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 739 | 780 | 5.0024E-25 | - |
| CDD | cd01989 | STK_N | 15 | 168 | 1.64842E-47 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 464 | 706 | 2.6E-32 | IPR001245 |
| Pfam | PF04564 | U-box domain | 736 | 803 | 2.0E-14 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 442 | 714 | 9.43E-55 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 723 | 804 | 8.65E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 533 | 721 | 3.1E-36 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 734 | 805 | 4.8E-26 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 4 | 133 | 3.0E-5 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 432 | 531 | 2.5E-23 | - |
| SMART | SM00504 | Ubox_2 | 738 | 801 | 4.7E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 734 | 805 | 33.986946 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 459 | 720 | 28.993793 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 465 | 486 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 257 | - | - |
| Coils | Coil | Coil | 334 | 361 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49060.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_013630025.1 | PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 32-like [Brassica oleracea var. oleracea] | 0 |
| Q94A51 | U-box domain-containing protein 32 OS=Arabidopsis thaliana OX=3702 GN=PUB32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8BAD8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_009575 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology