Basic Information
Locus ID:
BniB06g008820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B6 | 4440358 | 4445155 | - | BniB06g008820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 137,272.50 Da | 47.11 | 72.55 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 176 | 270 | 5.11238E-42 | - |
| CDD | cd13999 | STKc_MAP3K-like | 971 | 1227 | 1.99476E-108 | - |
| Pfam | PF00564 | PB1 domain | 188 | 270 | 5.7E-21 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 966 | 1227 | 1.5E-60 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 957 | 1226 | 1.52E-76 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 189 | 275 | 1.55E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1054 | 1248 | 4.2E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 958 | 1053 | 1.3E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 191 | 273 | 2.1E-10 | - |
| SMART | SM00666 | PB1_new | 187 | 273 | 6.0E-31 | IPR000270 |
| SMART | SM00220 | serkin_6 | 965 | 1235 | 3.9E-57 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 965 | 1230 | 40.626076 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1089 | 1101 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 971 | 992 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1047 | 1060 | 3.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1083 | 1101 | 3.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1154 | 1176 | 3.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1198 | 1220 | 3.0E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 565 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_018440012.1 | PREDICTED: uncharacterized protein LOC108812288 [Raphanus sativus] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0JWE9 | uncharacterized protein LOC108812288 OS=Raphanus sativus OX=3726 GN=LOC108812288 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology